PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0037s0146.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family Trihelix
Protein Properties Length: 313aa    MW: 35001.6 Da    PI: 8.4531
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0037s0146.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.7e-0759121347
                          SS-HHHHHHHHHHHHHTTTT...............-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...............tWktIartmg...kgRtlkqcksrwqky 47 
                          +WT  E + l+da k+   +                W+ +a +m     gR++ qc+++w + 
  Mapoly0037s0146.1.p  59 PWTVSEMLTLIDAKKEERERcqmyklqgvklpaaeKWRIVATHMEtkdMGRSGSQCQDKWENM 121
                          7***********************************************************987 PP

2trihelix51.33.1e-1660147286
             trihelix   2 WtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                          Wt +e l+Li+a++e  er +  k       ++ +W+ v+ +m+ + + rs  qC++kwen+ k+yk+++e++   +++ +    yf+++
  Mapoly0037s0146.1.p  60 WTVSEMLTLIDAKKEERERCQMYKlqgvklPAAEKWRIVATHMETKDMGRSGSQCQDKWENMMKDYKAVREWQYIMNPTGK---NYFKEM 146
                          *********************86555566689****************************************998755554...789998 PP

             trihelix  86 e 86 
                          +
  Mapoly0037s0146.1.p 147 T 147
                          7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.24652122IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.4E-755123IPR009057Homeodomain-like
SMARTSM007171.3E-456124IPR001005SANT/Myb domain
PfamPF138371.8E-1758147No hitNo description
SuperFamilySSF466891.96E-585136IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEGENGEASD PTQEVATLNL SACPHTPSAF PTPATSDCNG GPGGARTQSN NKKRSRSAPW  60
TVSEMLTLID AKKEERERCQ MYKLQGVKLP AAEKWRIVAT HMETKDMGRS GSQCQDKWEN  120
MMKDYKAVRE WQYIMNPTGK NYFKEMTNKE RKDASLPPQM DEVVFYSLHA IQNEKEEKKD  180
KARRKIERDS FKQPNVGNSL PVGTLATKDK VGSSEANDME SMDTDSSGKR RRRKKVGQDK  240
PPIGLENPVV LDDFVHAMKD GSKELVECFM KVLERNERQP SGELDTKTKD TATLAQVLVA  300
LADAVKTIAE KL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228233KRRRRK
2228234KRRRRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001772272.11e-128predicted protein
TrEMBLA9T0V71e-128A9T0V7_PHYPA; Predicted protein
STRINGPP1S148_18V6.11e-128(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1528033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.12e-14Trihelix family protein